Module 5 : Analysis of biomolecules

Lecture 35 :Electrophoresis (Part-I)

The place where,

The electrophoretic mobility v is given by:

As Q=ze, where z is the valency and e is the electronic charge, the electrophoretic mobility can be expressed as: 

Hence, electrophoretic mobility v is directly proportional to the charge and inversely proportional to the viscosity of the medium, size and shape of the molecule. In the case of relative mobility, it is directly related to the charge/radius of the molecule. For a globular protein, the radius (r) of the molecule is related to the molecular mass of the macromolecule. The relative mobility, v’ is as follows

Electrophoretic techniques: Different types of electrophoresis techniques are designed depending upon whether it carried out in the presence or absence of a supporting media.  
Moving boundary electrophoresis-In this method, the electrophoresis is carried in solution, without a supporting media. The sample is dissolved the buffer and molecules move to their respective counter charge electrodes. The resolution of the technique is very low due to the mixing of the sample as well as over-lapping of the sample components. The electrophoresis technique is not good to separate and analyze the complex biological sample instead it can be used to study the behavior of the molecule in an electric field.   

Zone electrophoresis-In this method, an inert polymeric supporting media is used between the electrodes to separate and analyze the sample. The supporting media used in zone electrophoresis are absorbent paper, gel of starch, agar and polyacrylamide. The major advantage of presence of supporting media is that it minimizes mixing of the sample and immobilization of the molecule after electrophoresis. It makes the analysis and purification of the molecule from the gel much easier than the moving boundary electrophoresis. The gel electrophoresis is the best example of zone electrophoresis.