Module 4 : A Case Study using Molecular Dynamics with NAMD

Lecture 20 : Input files in NAMD and VMD

PDB File for [Bmim][PF6]

PSF File for [Bmim][PF6] :

(a) atom number; (b) segment name; (c) residue number; (d) residue name;

(e) atom name; (f) atom type; (g) partial charge via CHELPG;  (h) atomic mass;