Module 1 : Basics of proteomics
Lecture 2 : Basics of Amino acids and Protein
 

C. Significance of Amino Acid sequence

Amino acids can exist as L-isomers or D-isomers. However with respect to the conformational stability, all amino acids are usually found in the L-isomeric form.

ANFINSEN’S EXPERIMENT (Reported in 1973)

  • OBJECTIVE:  To establish that amino acid sequence dictates protein folding.
  • EXPERIMENTAL INSIGHTS:

The roles of compounds like Urea, Guanidine HCl, β-mercaptoethanol, etc. on the refolding of an enzyme Riobnuclease A was elucidated through the experimental study. 8M Urea and Guanidine HCl together act as denaturants and disrupt the non-covalent bonds present in the protein. β-mercaptoethanol on the other hand acts as a reducing agent and disrupts the disulfide bonds, and when applied in large excess converts the disulfides to sulfhydryls. This denatured and reduced form of Ribonuclease A lacks enzymatic activity.

When Urea and β-mercaptoethanol removed are by the dialysis, the denatured and reduced Ribonuclease A spontaneously regains its native conformation and enzymatic activity. The removal of β-mercaptoethanol alone, however did not render the Ribonuclease A active and still lacks its enzymatic activity. It was also observed that trace amounts of β-mercaptoethanol facilitated the correct disulfide bonding and thereby enhanced the formation of native Ribonuclease A.

  • CONCLUSIONS:  The phenomenon of protein folding is governed by the amino acid sequence, which is the actual repository of all the genetic information.

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Illustration: Anfinsen’s experiment

Ribonuclease A in its native state has four disulphide bonds between its cysteine residues. When treated with β-mercaptoethanol and 6M Urea, the protein undergoes denaturation and the disulphide linkages are broken. Enzyme activity is lost in the denatured state. It was observed by Anfinsen that removal of urea and β-mercaptoethanol led to the refolding of the enzyme to assume its native state with more than 90% enzyme activity being intact. However, if only β-mercaptoethanol was removed in presence of urea, the formation of disulphide bonds was random, leading to enzyme with only around 1% activity.